Tools
pSearch
To search for homologous protein sequences
Paste protein sequence in Fasta format:
Output format:
HTML
NiceBlast
Plain Text
XML
Database:
Complete database
------
Bacteria+Archaea
Bacteria
Archaea
Viruses
Eukaryota
Viridiplantae
Fungi
Metazoa
Arthropoda
Vertebrata
Mammalia
Rodentia
Primates
------
All complete proteomes
Mitochondrion-encoded proteins
------
Arabidopsis thaliana
Caenorhabditis elegans
Drosophila melanogaster
Escherichia coli
Homo sapiens
Mus musculus
Rattus norvegicus
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Plasmodium falciparum
Comparison Matrix:
Auto-select
BLOSUM45
BLOSUM62
BLOSUM80
PAM30
PAM70
Number of best scoring sequences to show:
0
50
100
250
1000
3000
Number of best alignments to show:
0
50
100
250
1000
Setting the
E
threshold:
0.0001
0.001
0.01
0.1
1
10
100
1000
10000
(Number of expected matches in a random database)
Filter the sequence for low-complexity regions
Gapped alignment
Identity BLAST
or
The above macro is based on
SIB-Blast
algorithm.
Copyright © 2004 FAROOQ LABORATORY