Tools
dAlign
Pairwise alignment of DNA sequences
Paste DNA sequences in Fasta format:
>Seq1 >Seq2
Output order:
Input
Aligned
Iterative algorithm:
FFT-NS-1 (Very fast)
FFT-NS-2 (Fast)
FFT-NS-i2 (Medium)
FFT-NS-i (Slow)
L-INS-i (Very slow)
E-INS-i (Extremely slow)
Alignment Parameters:
Scoring matrix:
BLOSUM30
BLOSUM45
BLOSUM62
BLOSUM80
JTT100
JTT200
Gap opening penalty:
(1.0-3.0)
Gap extension penalty:
(0.0-1.0)
The above macro is based on
MAFFT
algorithm.
Copyright © 2004 FAROOQ LABORATORY