Tools

dAlign
Pairwise alignment of DNA sequences
Paste DNA sequences in Fasta format:

Output order:
Input
Aligned

Iterative algorithm:
FFT-NS-1 (Very fast)
FFT-NS-2 (Fast)
FFT-NS-i2 (Medium)
FFT-NS-i (Slow)
L-INS-i (Very slow)
E-INS-i (Extremely slow)

Alignment Parameters:
Scoring matrix:
Gap opening penalty: (1.0-3.0)
Gap extension penalty: (0.0-1.0)


The above macro is based on MAFFT algorithm.
Copyright © 2004 FAROOQ LABORATORY